Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CPF_2129Fibronectin type III domain protein; Identified by match to protein family HMM PF00041; match to protein family HMM PF08305. (1479 aa)    
Predicted Functional Partners:
CPF_2130
Calx-beta domain protein; Identified by match to protein family HMM PF00754; match to protein family HMM PF03160.
  
 
0.970
CPF_0652
F5/8 type C domain protein; Identified by match to protein family HMM PF00754.
  
     0.758
CPF_1614
Glycosyl hydrolase, family 20; Identified by match to protein family HMM PF00041; match to protein family HMM PF00728; match to protein family HMM PF00754.
  
     0.684
CPF_0766
Beta-galactosidase; Identified by match to protein family HMM PF00703; match to protein family HMM PF02836; match to protein family HMM PF02837; match to protein family HMM PF02929.
  
     0.619
CPF_0826
Glycosyl hydrolase, family 2; Identified by match to protein family HMM PF00703; match to protein family HMM PF02836; match to protein family HMM PF02837; Belongs to the glycosyl hydrolase 2 family.
  
     0.564
CPF_1087
Identified by match to protein family HMM PF00128; match to protein family HMM PF02368; match to protein family HMM PF02922; match to protein family HMM PF03714; match to protein family HMM PF07523; match to protein family HMM TIGR01167; match to protein family HMM TIGR02104; Belongs to the glycosyl hydrolase 13 family.
  
  
 0.542
CPF_0859
Identified by match to protein family HMM PF00041; match to protein family HMM PF00754; match to protein family HMM PF05089; match to protein family HMM PF07554.
  
     0.526
CPF_1473
Conserved hypothetical protein.
 
     0.509
rplY
50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
       0.501
fucP
L-fucose:H+ symporter permease; Identified by similarity to SP:P11551; match to protein family HMM PF07690; match to protein family HMM TIGR00885.
 
     0.492
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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