STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ytxCPutative sporulation protein YtxC; Identified by similarity to PIR:D97191; match to protein family HMM PF08812; match to protein family HMM TIGR02834. (292 aa)    
Predicted Functional Partners:
CPF_2148
Conserved hypothetical protein; Identified by similarity to PIR:E97191.
 
     0.751
CPF_2975
Conserved hypothetical protein; Identified by similarity to PIR:E97356.
  
     0.729
CPF_2083
Stage III sporulation protein AE; Identified by match to protein family HMM PF09546; match to protein family HMM TIGR02829.
  
     0.725
CPF_2839
Conserved hypothetical protein; Identified by similarity to PIR:C97267.
  
     0.714
CPF_2884
Putative membrane protein.
 
     0.710
CPF_2013
PRC-barrel domain protein; Identified by match to protein family HMM PF05239; match to protein family HMM TIGR02888.
  
   
 0.708
yyaC
Putative sporulation protein YyaC; Identified by similarity to PIR:E97251; match to protein family HMM PF06866; match to protein family HMM TIGR02841.
  
     0.692
CPF_0299
Putative membrane protein.
  
     0.687
CPF_2921
Putative membrane protein; Identified by similarity to PIR:H97140.
  
    0.687
CPF_2159
Small acid-soluble spore protein; Identified by match to protein family HMM PF00269.
  
    0.669
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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