STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPF_2148Conserved hypothetical protein; Identified by similarity to PIR:E97191. (231 aa)    
Predicted Functional Partners:
CPF_1971
Radical SAM domain protein; Identified by match to protein family HMM PF04055.
     0.881
ytxC
Putative sporulation protein YtxC; Identified by similarity to PIR:D97191; match to protein family HMM PF08812; match to protein family HMM TIGR02834.
 
     0.747
CPF_2577
Putative 8-oxoguanine DNA glycosylase; Identified by match to protein family HMM PF00730; match to protein family HMM PF07934.
  
     0.661
CPF_2168
Conserved hypothetical protein; Identified by similarity to PIR:A97194.
  
     0.603
infC
Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.
       0.496
CPF_1658
Conserved hypothetical protein; Identified by similarity to GB:AAO35894.1.
  
     0.489
rpmI
50S ribosomal protein L35; Identified by similarity to SP:P55874; match to protein family HMM PF01632; match to protein family HMM TIGR00001; Belongs to the bacterial ribosomal protein bL35 family.
       0.484
CPF_2981
Conserved hypothetical protein; Identified by similarity to GB:AAM24878.1.
  
     0.475
rplT
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
       0.469
CPF_2563
Hypothetical protein; Identified by glimmer; putative.
  
     0.462
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.