STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPF_2159Small acid-soluble spore protein; Identified by match to protein family HMM PF00269. (90 aa)    
Predicted Functional Partners:
CPF_2158
Conserved hypothetical protein; Identified by similarity to GB:AAS43311.1; match to protein family HMM PF08241; match to protein family HMM PF08242.
  
    0.730
CPF_2166
Single-strand binding domain protein; Identified by similarity to SP:P37455; match to protein family HMM PF00436.
  
     0.724
hslO
Chaperonin, 33 kDa; Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress.
  
    0.707
cotS
Spore coat protein CotS; Identified by similarity to SP:P46914; match to protein family HMM TIGR02906.
  
     0.696
CPF_2479
lysM domain protein; Identified by match to protein family HMM PF01476.
  
     0.683
ytxC
Putative sporulation protein YtxC; Identified by similarity to PIR:D97191; match to protein family HMM PF08812; match to protein family HMM TIGR02834.
  
    0.667
CPF_2484
Spore coat protein, CotS family; Identified by similarity to SP:P46914; match to protein family HMM PF01633; match to protein family HMM PF02958; match to protein family HMM TIGR02906.
  
     0.656
CPF_2975
Conserved hypothetical protein; Identified by similarity to PIR:E97356.
  
     0.656
CPF_2267
Putative spore coat protein; Identified by similarity to SP:P46914; match to protein family HMM TIGR02906.
  
     0.650
gpr
Spore protease; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
   
 0.639
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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