Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CPF_2168Conserved hypothetical protein; Identified by similarity to PIR:A97194. (176 aa)    
Predicted Functional Partners:
CPF_2166
Single-strand binding domain protein; Identified by similarity to SP:P37455; match to protein family HMM PF00436.
 
     0.889
CPF_2939
Putative DNA replication protein DnaD; Identified by similarity to SP:P39787; match to protein family HMM PF04271; match to protein family HMM TIGR01446.
  
     0.769
CPF_2940
Putative DNA replication protein DnaC; Identified by similarity to SP:P07905.
  
     0.740
CPF_2167
Identified by match to protein family HMM PF01522; match to protein family HMM TIGR02764.
       0.668
CPF_2479
lysM domain protein; Identified by match to protein family HMM PF01476.
  
     0.626
CPF_2577
Putative 8-oxoguanine DNA glycosylase; Identified by match to protein family HMM PF00730; match to protein family HMM PF07934.
  
     0.609
CPF_2148
Conserved hypothetical protein; Identified by similarity to PIR:E97191.
  
     0.603
CPF_2159
Small acid-soluble spore protein; Identified by match to protein family HMM PF00269.
  
     0.598
secG
Preprotein translocase, SecG subunit; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.
  
     0.591
CPF_2169
Putative membrane protein; Identified by match to protein family HMM PF01594.
       0.580
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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