STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPF_2176Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719. (116 aa)    
Predicted Functional Partners:
CPF_1920
Putative DNA polymerase III, epsilon subunit; Identified by match to protein family HMM PF00929.
 
    0.774
CPF_2124
Hypothetical protein; Identified by glimmer; putative.
  
 
 0.760
CPF_2126
TPR domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
 
 
 0.749
CPF_2245
Conserved hypothetical protein; Identified by similarity to PIR:H97195.
  
 
 0.739
CPF_2611
Conserved hypothetical protein; Identified by similarity to GB:AAO36364.1.
   
 0.735
CPF_2839
Conserved hypothetical protein; Identified by similarity to PIR:C97267.
  
     0.732
CPF_1933
PRC-barrel domain protein; Identified by match to protein family HMM PF05239; match to protein family HMM TIGR02888.
  
    0.728
CPF_2497
Identified by match to protein family HMM PF05866.
  
     0.713
CPF_1559
Putative adenylate cyclase; Identified by match to protein family HMM PF01928.
  
     0.707
yabQ
Spore cortex biosynthesis protein YabQ; Identified by similarity to PIR:E97294; match to protein family HMM TIGR02893.
  
     0.679
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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