Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
potASpermidine/putrescine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family. (349 aa)    
Predicted Functional Partners:
potB
Spermidine/putrescine ABC transporter, permease protein PotB; Identified by similarity to SP:P23860; match to protein family HMM PF00528.
 
 0.996
potC
Spermidine/putrescine ABC transporter, permease protein PotC; Identified by match to protein family HMM PF00528.
 
 0.996
potD
Spermidine/putrescine ABC transporter, spermidine/putrescine-binding protein; Identified by similarity to SP:P23861; match to protein family HMM PF01547.
 
 0.994
CPF_1480
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 
 0.928
CPF_1479
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 
 0.909
CPF_2222
Identified by match to protein family HMM PF01381; match to protein family HMM PF07883.
 
  
 0.791
CPF_1477
ABC transporter, substrate-binding protein; Identified by match to protein family HMM PF01547.
 
 
 0.737
CPF_0441
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
  
 
 0.618
CPF_0538
Glycine betaine/L-proline ABC transporter, permease/glycine betaine/L-proline-binding protein; Identified by match to protein family HMM PF00528; match to protein family HMM PF04069.
  
 
 0.541
modB
Molybdate ABC transporter, permease protein; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
    
 0.522
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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