Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CPF_2245Conserved hypothetical protein; Identified by similarity to PIR:H97195. (198 aa)    
Predicted Functional Partners:
CPF_1775
Putative phytase; Identified by similarity to PDB:1U24.
  
 0.916
CPF_1992
Identified by match to protein family HMM PF00481.
  
 0.884
CPF_2611
Conserved hypothetical protein; Identified by similarity to GB:AAO36364.1.
   
 0.828
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
  
 
 0.786
yabQ
Spore cortex biosynthesis protein YabQ; Identified by similarity to PIR:E97294; match to protein family HMM TIGR02893.
  
     0.736
CPF_2176
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
  
 
 0.724
CPF_1554
Identified by match to protein family HMM PF00485.
   
 0.709
udk
Uridine kinase; Identified by similarity to SP:O32033; match to protein family HMM PF00485; match to protein family HMM TIGR00235.
   
 0.709
hsp90
Heat shock protein; Molecular chaperone. Has ATPase activity.
  
 
 0.700
CPF_2267
Putative spore coat protein; Identified by similarity to SP:P46914; match to protein family HMM TIGR02906.
  
     0.691
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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