Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
CPF_0969 | CPF_2259 | KID repeat family protein. | Putative membrane protein. | 0.446 |
CPF_2257 | CPF_2258 | Hypothetical protein; Identified by glimmer; putative. | Radical SAM domain protein; Identified by match to protein family HMM PF04055. | 0.468 |
CPF_2257 | CPF_2259 | Hypothetical protein; Identified by glimmer; putative. | Putative membrane protein. | 0.446 |
CPF_2257 | CPF_2260 | Hypothetical protein; Identified by glimmer; putative. | Nucleoside hydrolase, IUNH family; Identified by similarity to SP:P33022; match to protein family HMM PF01156. | 0.423 |
CPF_2258 | CPF_2257 | Radical SAM domain protein; Identified by match to protein family HMM PF04055. | Hypothetical protein; Identified by glimmer; putative. | 0.468 |
CPF_2258 | CPF_2259 | Radical SAM domain protein; Identified by match to protein family HMM PF04055. | Putative membrane protein. | 0.898 |
CPF_2258 | CPF_2260 | Radical SAM domain protein; Identified by match to protein family HMM PF04055. | Nucleoside hydrolase, IUNH family; Identified by similarity to SP:P33022; match to protein family HMM PF01156. | 0.798 |
CPF_2259 | CPF_0969 | Putative membrane protein. | KID repeat family protein. | 0.446 |
CPF_2259 | CPF_2257 | Putative membrane protein. | Hypothetical protein; Identified by glimmer; putative. | 0.446 |
CPF_2259 | CPF_2258 | Putative membrane protein. | Radical SAM domain protein; Identified by match to protein family HMM PF04055. | 0.898 |
CPF_2259 | CPF_2260 | Putative membrane protein. | Nucleoside hydrolase, IUNH family; Identified by similarity to SP:P33022; match to protein family HMM PF01156. | 0.935 |
CPF_2260 | CPF_2257 | Nucleoside hydrolase, IUNH family; Identified by similarity to SP:P33022; match to protein family HMM PF01156. | Hypothetical protein; Identified by glimmer; putative. | 0.423 |
CPF_2260 | CPF_2258 | Nucleoside hydrolase, IUNH family; Identified by similarity to SP:P33022; match to protein family HMM PF01156. | Radical SAM domain protein; Identified by match to protein family HMM PF04055. | 0.798 |
CPF_2260 | CPF_2259 | Nucleoside hydrolase, IUNH family; Identified by similarity to SP:P33022; match to protein family HMM PF01156. | Putative membrane protein. | 0.935 |