STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPF_2262Conserved hypothetical protein; Identified by similarity to PIR:F97060; match to protein family HMM PF04816. (229 aa)    
Predicted Functional Partners:
CPF_2261
Identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486.
 
  
 0.983
CPF_2263
Putative membrane protein.
       0.809
CPF_2032
Conserved hypothetical protein; Identified by similarity to SP:Q97IG2; match to protein family HMM PF06135; Belongs to the UPF0297 family.
  
     0.748
spoVB
Stage V sporulation protein B; Identified by similarity to SP:Q00758; match to protein family HMM PF01943; match to protein family HMM PF03023.
  
     0.670
spoVB-3
Stage V sporulation protein B; Identified by match to protein family HMM PF01943; match to protein family HMM PF03023.
  
     0.669
whiA
Conserved hypothetical protein; Involved in cell division and chromosome segregation.
  
     0.621
CPF_1968
DNA-binding protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein.
  
     0.615
CPF_2979
Conserved hypothetical protein; Identified by similarity to GB:AAM25886.1; match to protein family HMM PF06107.
  
     0.608
rpoD
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
       0.575
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
       0.549
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.