STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPF_2270UBA/TS-N domain protein; Identified by match to protein family HMM PF00627. (208 aa)    
Predicted Functional Partners:
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
 
     0.847
CPF_2274
Identified by similarity to SP:P19638; match to protein family HMM PF01219; match to protein family HMM PF01569.
 
     0.684
era
GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
       0.678
cdd
Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.
       0.678
CPF_2055
Oxidoreductase family protein; Identified by similarity to SP:P25983.
  
     0.668
CPF_2839
Conserved hypothetical protein; Identified by similarity to PIR:C97267.
  
     0.659
yqfC
Sporulation protein YqfC; Identified by similarity to PIR:B97059; match to protein family HMM PF07241; match to protein family HMM TIGR02856.
 
     0.651
CPF_2981
Conserved hypothetical protein; Identified by similarity to GB:AAM24878.1.
  
     0.635
CPF_2269
CBS domain protein; Identified by match to protein family HMM PF00571; match to protein family HMM PF08279.
 
     0.611
ytxC
Putative sporulation protein YtxC; Identified by similarity to PIR:D97191; match to protein family HMM PF08812; match to protein family HMM TIGR02834.
  
     0.610
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.