Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CPF_2297Stage II sporulation protein P; Identified by match to protein family HMM PF07454; match to protein family HMM TIGR02867. (361 aa)    
Predicted Functional Partners:
gpr
Spore protease; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
 
    0.916
spoIIE
Stage II sporulation protein E; Identified by similarity to SP:P37475; match to protein family HMM PF07228; match to protein family HMM TIGR02865.
  
   
 0.863
spoIVA
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
 
   
 0.857
spoIIAB
Anti-sigma F factor; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition.
  
   
 0.850
spoIIID
Stage III sporulation protein D; Identified by similarity to SP:P15281; match to protein family HMM TIGR02844.
  
  
 0.847
CPF_2475
Stage II sporulation protein R; Identified by similarity to SP:P39151; match to protein family HMM PF09551; match to protein family HMM TIGR02837.
  
   
 0.843
CPF_2277
Putative stage IV sporulation protein; Identified by match to protein family HMM PF06898; match to protein family HMM TIGR02876.
 
   
 0.837
CPF_2081
Stage III sporulation protein AG; Identified by match to protein family HMM TIGR02830.
  
  
 0.833
CPF_2085
Stage III sporulation protein AC; Identified by match to protein family HMM PF06686; match to protein family HMM TIGR02848.
  
  
 0.827
CPF_2083
Stage III sporulation protein AE; Identified by match to protein family HMM PF09546; match to protein family HMM TIGR02829.
  
   
 0.826
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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