Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ybbBtRNA 2-selenouridine synthase; Identified by similarity to GB:AAR34566.1; match to protein family HMM TIGR03167. (356 aa)    
Predicted Functional Partners:
CPF_2326
DNA topoisomerase, GyrB/ParE subunit family; Identified by similarity to SP:Q59961; match to protein family HMM PF00204; match to protein family HMM PF00986; match to protein family HMM PF01751; match to protein family HMM PF02518.
       0.832
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP.
 
   
 0.828
CPF_2325
DNA gyrase/topoisomerase IV, A subunit family protein; Identified by similarity to SP:P05653; match to protein family HMM PF00521; match to protein family HMM PF03989.
       0.817
CPF_2324
Identified by match to protein family HMM PF01965; match to protein family HMM TIGR01383.
       0.810
CPF_2323
Peptidase, M16 family; Identified by match to protein family HMM PF00675; match to protein family HMM PF05193.
       0.515
recJ
single-stranded-DNA-specific exonuclease RecJ; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644.
       0.491
selA
L-seryl-tRNA selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
 
   
 0.471
CPF_2328
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.
       0.443
selB
Selenocysteine-specific translation elongation factor; Identified by similarity to SP:P14081; match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM PF08477; match to protein family HMM PF09106; match to protein family HMM PF09107; match to protein family HMM TIGR00231; match to protein family HMM TIGR00475.
  
   
 0.401
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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