CPF_2338 protein (Clostridium perfringens ATCC 13124)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

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co-expression

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[Homology]

Score

CPF_2338

ABC transporter, permease protein; Identified by match to protein family HMM PF00528. (318 aa)

Predicted Functional Partners:

CPF_2339

0.992

CPF_1077

0.977

CPF_1283

0.977

CPF_1285

0.977

CPF_1466

0.977

CPF_2335

0.977

CPF_2654

0.949

CPF_1114

0.923

CPF_0557

0.922

CPF_2651

0.908

Your Current Organism:

Clostridium perfringens ATCC 13124

NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
CPF_0557	CPF_1077	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	Bacterial extracellular solute-binding protein; Identified by match to protein family HMM PF01547.	0.590
CPF_0557	CPF_1283	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	Conserved hypothetical protein.	0.590
CPF_0557	CPF_1285	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	Conserved hypothetical protein; Identified by similarity to PIR:D83749; match to protein family HMM PF01547.	0.590
CPF_0557	CPF_1466	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	Putative lipoprotein; Identified by similarity to SP:P37966; match to protein family HMM PF01547.	0.590
CPF_0557	CPF_2335	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	Bacterial extracellular solute-binding protein; Identified by similarity to SP:P37966; match to protein family HMM PF01547.	0.590
CPF_0557	CPF_2338	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.922
CPF_0557	CPF_2654	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.	0.980
CPF_1077	CPF_0557	Bacterial extracellular solute-binding protein; Identified by match to protein family HMM PF01547.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.590
CPF_1077	CPF_1114	Bacterial extracellular solute-binding protein; Identified by match to protein family HMM PF01547.	Sugar ABC transporter, permease protein; Identified by similarity to SP:P94529; match to protein family HMM PF00528.	0.590
CPF_1077	CPF_2338	Bacterial extracellular solute-binding protein; Identified by match to protein family HMM PF01547.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.977
CPF_1077	CPF_2339	Bacterial extracellular solute-binding protein; Identified by match to protein family HMM PF01547.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.960
CPF_1077	CPF_2651	Bacterial extracellular solute-binding protein; Identified by match to protein family HMM PF01547.	Putative maltose/maltodextrin ABC transporter, permease protein; Identified by similarity to SP:P02916; match to protein family HMM PF00528.	0.590
CPF_1077	CPF_2654	Bacterial extracellular solute-binding protein; Identified by match to protein family HMM PF01547.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.	0.751
CPF_1114	CPF_1077	Sugar ABC transporter, permease protein; Identified by similarity to SP:P94529; match to protein family HMM PF00528.	Bacterial extracellular solute-binding protein; Identified by match to protein family HMM PF01547.	0.590
CPF_1114	CPF_1283	Sugar ABC transporter, permease protein; Identified by similarity to SP:P94529; match to protein family HMM PF00528.	Conserved hypothetical protein.	0.590
CPF_1114	CPF_1285	Sugar ABC transporter, permease protein; Identified by similarity to SP:P94529; match to protein family HMM PF00528.	Conserved hypothetical protein; Identified by similarity to PIR:D83749; match to protein family HMM PF01547.	0.590
CPF_1114	CPF_1466	Sugar ABC transporter, permease protein; Identified by similarity to SP:P94529; match to protein family HMM PF00528.	Putative lipoprotein; Identified by similarity to SP:P37966; match to protein family HMM PF01547.	0.590
CPF_1114	CPF_2335	Sugar ABC transporter, permease protein; Identified by similarity to SP:P94529; match to protein family HMM PF00528.	Bacterial extracellular solute-binding protein; Identified by similarity to SP:P37966; match to protein family HMM PF01547.	0.590
CPF_1114	CPF_2338	Sugar ABC transporter, permease protein; Identified by similarity to SP:P94529; match to protein family HMM PF00528.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.923
CPF_1114	CPF_2654	Sugar ABC transporter, permease protein; Identified by similarity to SP:P94529; match to protein family HMM PF00528.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.	0.994