CPF_2349 protein (Clostridium perfringens ATCC 13124)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CPF_2349

Amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:P54954; match to protein family HMM PF00005. (245 aa)

Predicted Functional Partners:

CPF_2350

0.997

CPF_0582

0.963

CPF_1532

0.950

CPF_0581

0.884

CPF_1531

0.831

CPF_1791

0.716

CPF_2351

0.484

argG

0.436

Your Current Organism:

Clostridium perfringens ATCC 13124

NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CPF_0581	CPF_0582	CPF_0581	CPF_0582	Amino acid ABC transporter, amino acid-binding protein; Identified by match to protein family HMM PF00497; Belongs to the bacterial solute-binding protein 3 family.	Amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.	0.999
CPF_0581	CPF_1532	CPF_0581	CPF_1532	Amino acid ABC transporter, amino acid-binding protein; Identified by match to protein family HMM PF00497; Belongs to the bacterial solute-binding protein 3 family.	Amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.	0.983
CPF_0581	CPF_2349	CPF_0581	CPF_2349	Amino acid ABC transporter, amino acid-binding protein; Identified by match to protein family HMM PF00497; Belongs to the bacterial solute-binding protein 3 family.	Amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:P54954; match to protein family HMM PF00005.	0.884
CPF_0581	CPF_2350	CPF_0581	CPF_2350	Amino acid ABC transporter, amino acid-binding protein; Identified by match to protein family HMM PF00497; Belongs to the bacterial solute-binding protein 3 family.	Identified by match to protein family HMM PF00497; match to protein family HMM PF00528; match to protein family HMM TIGR01726.	0.452
CPF_0581	argG	CPF_0581	CPF_0683	Amino acid ABC transporter, amino acid-binding protein; Identified by match to protein family HMM PF00497; Belongs to the bacterial solute-binding protein 3 family.	Argininosuccinate synthase; Identified by match to protein family HMM PF00764; match to protein family HMM TIGR00032; Belongs to the argininosuccinate synthase family. Type 1 subfamily.	0.926
CPF_0582	CPF_0581	CPF_0582	CPF_0581	Amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.	Amino acid ABC transporter, amino acid-binding protein; Identified by match to protein family HMM PF00497; Belongs to the bacterial solute-binding protein 3 family.	0.999
CPF_0582	CPF_1531	CPF_0582	CPF_1531	Amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.	Amino acid ABC transporter, amino acid-binding protein; Identified by similarity to SP:P10344; match to protein family HMM PF00497.	0.949
CPF_0582	CPF_1532	CPF_0582	CPF_1532	Amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.	Amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.	0.427
CPF_0582	CPF_2349	CPF_0582	CPF_2349	Amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.	Amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:P54954; match to protein family HMM PF00005.	0.963
CPF_0582	CPF_2350	CPF_0582	CPF_2350	Amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.	Identified by match to protein family HMM PF00497; match to protein family HMM PF00528; match to protein family HMM TIGR01726.	0.573
CPF_0582	argG	CPF_0582	CPF_0683	Amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.	Argininosuccinate synthase; Identified by match to protein family HMM PF00764; match to protein family HMM TIGR00032; Belongs to the argininosuccinate synthase family. Type 1 subfamily.	0.654
CPF_1531	CPF_0582	CPF_1531	CPF_0582	Amino acid ABC transporter, amino acid-binding protein; Identified by similarity to SP:P10344; match to protein family HMM PF00497.	Amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.	0.949
CPF_1531	CPF_1532	CPF_1531	CPF_1532	Amino acid ABC transporter, amino acid-binding protein; Identified by similarity to SP:P10344; match to protein family HMM PF00497.	Amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.	0.999
CPF_1531	CPF_2349	CPF_1531	CPF_2349	Amino acid ABC transporter, amino acid-binding protein; Identified by similarity to SP:P10344; match to protein family HMM PF00497.	Amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:P54954; match to protein family HMM PF00005.	0.831
CPF_1531	CPF_2350	CPF_1531	CPF_2350	Amino acid ABC transporter, amino acid-binding protein; Identified by similarity to SP:P10344; match to protein family HMM PF00497.	Identified by match to protein family HMM PF00497; match to protein family HMM PF00528; match to protein family HMM TIGR01726.	0.435
CPF_1531	argG	CPF_1531	CPF_0683	Amino acid ABC transporter, amino acid-binding protein; Identified by similarity to SP:P10344; match to protein family HMM PF00497.	Argininosuccinate synthase; Identified by match to protein family HMM PF00764; match to protein family HMM TIGR00032; Belongs to the argininosuccinate synthase family. Type 1 subfamily.	0.416
CPF_1532	CPF_0581	CPF_1532	CPF_0581	Amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.	Amino acid ABC transporter, amino acid-binding protein; Identified by match to protein family HMM PF00497; Belongs to the bacterial solute-binding protein 3 family.	0.983
CPF_1532	CPF_0582	CPF_1532	CPF_0582	Amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.	Amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.	0.427
CPF_1532	CPF_1531	CPF_1532	CPF_1531	Amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.	Amino acid ABC transporter, amino acid-binding protein; Identified by similarity to SP:P10344; match to protein family HMM PF00497.	0.999
CPF_1532	CPF_2349	CPF_1532	CPF_2349	Amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.	Amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:P54954; match to protein family HMM PF00005.	0.950

page 1 of 3

Server load: low (10%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Co-occurrence

Textmining

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About