virI protein (Clostridium perfringens ATCC 13124)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

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[Homology]

Score

virI

DNA-binding response regulator; Identified by similarity to GB:BAA78773.1; match to protein family HMM PF00072; match to protein family HMM PF00486. (232 aa)

Predicted Functional Partners:

virJ

0.975

CPF_1243

0.881

CPF_1402

0.832

CPF_0225

0.800

CPF_2640

0.800

CPF_2242

0.798

hpkA

0.790

CPF_1140

0.786

CPF_2673

0.779

CPF_2241

0.778

Your Current Organism:

Clostridium perfringens ATCC 13124

NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CPF_0225	CPF_1243	CPF_0225	CPF_1243	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229.	0.810
CPF_0225	CPF_2241	CPF_0225	CPF_2241	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	0.785
CPF_0225	virI	CPF_0225	CPF_2356	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	DNA-binding response regulator; Identified by similarity to GB:BAA78773.1; match to protein family HMM PF00072; match to protein family HMM PF00486.	0.800
CPF_1140	CPF_1243	CPF_1140	CPF_1243	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229.	0.429
CPF_1140	hpkA	CPF_1140	CPF_1195	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	0.755
CPF_1140	virI	CPF_1140	CPF_2356	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	DNA-binding response regulator; Identified by similarity to GB:BAA78773.1; match to protein family HMM PF00072; match to protein family HMM PF00486.	0.786
CPF_1243	CPF_0225	CPF_1243	CPF_0225	Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229.	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	0.810
CPF_1243	CPF_1140	CPF_1243	CPF_1140	Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229.	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	0.429
CPF_1243	CPF_1402	CPF_1243	CPF_1402	Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229.	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	0.433
CPF_1243	CPF_2241	CPF_1243	CPF_2241	Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229.	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	0.495
CPF_1243	CPF_2242	CPF_1243	CPF_2242	Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229.	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	0.431
CPF_1243	CPF_2640	CPF_1243	CPF_2640	Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229.	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	0.436
CPF_1243	CPF_2673	CPF_1243	CPF_2673	Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229.	Putative sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	0.430
CPF_1243	hpkA	CPF_1243	CPF_1195	Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229.	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	0.825
CPF_1243	virI	CPF_1243	CPF_2356	Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229.	DNA-binding response regulator; Identified by similarity to GB:BAA78773.1; match to protein family HMM PF00072; match to protein family HMM PF00486.	0.881
CPF_1243	virJ	CPF_1243	CPF_2355	Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229.	Sensor histidine kinase; Identified by similarity to GB:BAA78774.1; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	0.460
CPF_1402	CPF_1243	CPF_1402	CPF_1243	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229.	0.433
CPF_1402	virI	CPF_1402	CPF_2356	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	DNA-binding response regulator; Identified by similarity to GB:BAA78773.1; match to protein family HMM PF00072; match to protein family HMM PF00486.	0.832
CPF_2241	CPF_0225	CPF_2241	CPF_0225	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	0.785
CPF_2241	CPF_1243	CPF_2241	CPF_1243	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229.	0.495

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