Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CPF_2368CspC family protein; Identified by similarity to GB:BAB60713.1; match to protein family HMM PF00082. (584 aa)    
Predicted Functional Partners:
CPF_2369
CspA family protein; Identified by similarity to GB:BAB60711.1; match to protein family HMM PF00082.
 
    
0.795
sleC
Spore cortex-lytic enzyme SleC; Identified by similarity to PIR:I40824; match to protein family HMM PF01471.
 
  
 0.794
CPF_2642
Conserved hypothetical protein; Identified by similarity to PIR:A96964; match to protein family HMM PF07561.
  
     0.749
CPF_2166
Single-strand binding domain protein; Identified by similarity to SP:P37455; match to protein family HMM PF00436.
  
     0.618
CPF_2159
Small acid-soluble spore protein; Identified by match to protein family HMM PF00269.
  
     0.607
CPF_2267
Putative spore coat protein; Identified by similarity to SP:P46914; match to protein family HMM TIGR02906.
  
     0.581
cotS
Spore coat protein CotS; Identified by similarity to SP:P46914; match to protein family HMM TIGR02906.
  
     0.528
CPF_0928
Transcriptional regulator, Cro/CI family; Identified by similarity to GB:AAL96794.1; match to protein family HMM PF01381.
  
    0.506
CPF_0596
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.
  
 
 
 0.491
CPF_2936
Putative membrane protein; Identified by match to protein family HMM PF04657.
  
     0.488
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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