Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dacF-2D-alanyl-D-alanine carboxypeptidase; Identified by similarity to SP:P38422; match to protein family HMM PF00768; match to protein family HMM PF07943; Belongs to the peptidase S11 family. (444 aa)    
Predicted Functional Partners:
dacF
D-alanyl-D-alanine carboxypeptidase; Identified by similarity to SP:P38422; match to protein family HMM PF00768; match to protein family HMM PF07943; Belongs to the peptidase S11 family.
 
  
 
0.925
CPF_2231
Identified by match to protein family HMM PF00768; Belongs to the peptidase S11 family.
  
  
 
0.925
CPF_2056
Identified by match to protein family HMM PF00768; Belongs to the peptidase S11 family.
  
  
 
0.922
CPF_1631
Identified by match to protein family HMM PF02557.
     
 0.913
pbpA
Penicillin-binding protein, 1A family; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits).
  
 
 0.912
CPF_2375
Putative comE operon protein 1; Identified by similarity to SP:P39694; match to protein family HMM PF00633; match to protein family HMM TIGR00426.
     
 0.649
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP.
       0.580
selA
L-seryl-tRNA selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
       0.562
selB
Selenocysteine-specific translation elongation factor; Identified by similarity to SP:P14081; match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM PF08477; match to protein family HMM PF09106; match to protein family HMM PF09107; match to protein family HMM TIGR00231; match to protein family HMM TIGR00475.
       0.554
CPF_2182
Identified by similarity to SP:P51831; match to protein family HMM PF00106.
   
    0.491
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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