STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPF_2389Peptidase, M50 family; Identified by match to protein family HMM PF02163. (284 aa)    
Predicted Functional Partners:
CPF_2390
M23 peptidase domain protein; Identified by match to protein family HMM PF01551.
       0.773
CPF_2387
Conserved hypothetical protein; Identified by similarity to GB:AAO36563.1.
 
     0.685
rodA
Rod shape-determining protein RodA; Identified by match to protein family HMM PF01098; match to protein family HMM TIGR02210; Belongs to the SEDS family.
  
  
 0.633
CPF_2388
Radical SAM domain protein; Identified by match to protein family HMM PF04055.
       0.627
CPF_2386
Ribonuclease, Rne/Rng family; Identified by similarity to SP:P25537; match to protein family HMM TIGR00757.
       0.612
CPF_2384
Conserved hypothetical protein; Identified by similarity to GB:AAO36560.1; match to protein family HMM PF04327.
 
     0.572
spoIIID
Stage III sporulation protein D; Identified by similarity to SP:P15281; match to protein family HMM TIGR02844.
   
  
 0.524
rpmA
50S ribosomal protein L27; Identified by similarity to SP:P05657; match to protein family HMM PF01016; match to protein family HMM TIGR00062; Belongs to the bacterial ribosomal protein bL27 family.
       0.510
rplU
50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
       0.510
mreD
Rod shape-determining protein MreD; Identified by match to protein family HMM TIGR03426.
 
     0.508
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.