Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CPF_2389Peptidase, M50 family; Identified by match to protein family HMM PF02163. (284 aa)    
Predicted Functional Partners:
CPF_2390
M23 peptidase domain protein; Identified by match to protein family HMM PF01551.
       0.773
CPF_2387
Conserved hypothetical protein; Identified by similarity to GB:AAO36563.1.
 
     0.690
rodA
Rod shape-determining protein RodA; Identified by match to protein family HMM PF01098; match to protein family HMM TIGR02210; Belongs to the SEDS family.
  
  
 0.636
CPF_2388
Radical SAM domain protein; Identified by match to protein family HMM PF04055.
       0.633
CPF_2386
Ribonuclease, Rne/Rng family; Identified by similarity to SP:P25537; match to protein family HMM TIGR00757.
       0.618
CPF_2384
Conserved hypothetical protein; Identified by similarity to GB:AAO36560.1; match to protein family HMM PF04327.
 
     0.576
mreD
Rod shape-determining protein MreD; Identified by match to protein family HMM TIGR03426.
 
     0.519
rpmA
50S ribosomal protein L27; Identified by similarity to SP:P05657; match to protein family HMM PF01016; match to protein family HMM TIGR00062; Belongs to the bacterial ribosomal protein bL27 family.
       0.515
rplU
50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
       0.515
minE
Cell division topological specificity factor MinE; Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell.
       0.508
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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