STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rodARod shape-determining protein RodA; Identified by match to protein family HMM PF01098; match to protein family HMM TIGR02210; Belongs to the SEDS family. (374 aa)    
Predicted Functional Partners:
CPF_2395
Putative penicillin-binding protein; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717.
 
 
 0.932
mreB
Rod shape-determining protein MreB; Identified by match to protein family HMM PF02491; match to protein family HMM PF06723; match to protein family HMM TIGR00904.
 
 
 0.925
CPF_0340
Putative penicillin-binding protein; Identified by match to protein family HMM PF00905.
 
 0.893
spoVD-3
Stage V sporulation protein D; Identified by similarity to SP:Q03524; match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793; match to protein family HMM TIGR02214.
 
 0.890
mreC
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
 
  
 0.890
spoVD-2
Stage V sporulation protein D; Identified by similarity to SP:Q03524; match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793; match to protein family HMM TIGR02214.
 
 0.889
spoVD
Stage V sporulation protein D; Identified by similarity to SP:Q03524; match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793; match to protein family HMM TIGR02214.
 
 0.886
CPF_2022
Putative penicillin-binding protein; Identified by match to protein family HMM PF00905.
 
 
 0.864
murC
UDP-N-acetylmuramate--alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
 
  
 0.854
mbl
Mbl protein; Identified by similarity to SP:P39751; match to protein family HMM PF06723; match to protein family HMM TIGR00904.
 
 
 0.847
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.