Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CPF_2406 | CPF_2407 | CPF_2406 | CPF_2407 | Heavy metal binding protein; Identified by match to protein family HMM PF00403. | Conserved hypothetical protein; Identified by match to protein family HMM PF03883; Belongs to the UPF0246 family. | 0.539 |
CPF_2407 | CPF_2406 | CPF_2407 | CPF_2406 | Conserved hypothetical protein; Identified by match to protein family HMM PF03883; Belongs to the UPF0246 family. | Heavy metal binding protein; Identified by match to protein family HMM PF00403. | 0.539 |
CPF_2407 | CPF_2408 | CPF_2407 | CPF_2408 | Conserved hypothetical protein; Identified by match to protein family HMM PF03883; Belongs to the UPF0246 family. | CBS domain protein; Identified by match to protein family HMM PF00571. | 0.604 |
CPF_2407 | ribD | CPF_2407 | CPF_0546 | Conserved hypothetical protein; Identified by match to protein family HMM PF03883; Belongs to the UPF0246 family. | Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | 0.406 |
CPF_2408 | CPF_2407 | CPF_2408 | CPF_2407 | CBS domain protein; Identified by match to protein family HMM PF00571. | Conserved hypothetical protein; Identified by match to protein family HMM PF03883; Belongs to the UPF0246 family. | 0.604 |
ribD | CPF_2407 | CPF_0546 | CPF_2407 | Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | Conserved hypothetical protein; Identified by match to protein family HMM PF03883; Belongs to the UPF0246 family. | 0.406 |