Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CPF_2487Putative mannosyltransferase; Identified by match to protein family HMM PF00534. (381 aa)    
Predicted Functional Partners:
CPF_2486
Spore coat protein, CotS family; Identified by similarity to SP:P46914; match to protein family HMM TIGR02906.
 
    0.901
CPF_2484
Spore coat protein, CotS family; Identified by similarity to SP:P46914; match to protein family HMM PF01633; match to protein family HMM PF02958; match to protein family HMM TIGR02906.
 
    0.879
CPF_2485
Conserved hypothetical protein; Identified by similarity to GB:AAO34914.1.
  
    0.848
CPF_1567
Conserved hypothetical protein; Identified by similarity to GB:AAR27352.1.
   
    0.614
CPF_2267
Putative spore coat protein; Identified by similarity to SP:P46914; match to protein family HMM TIGR02906.
  
  
 0.581
cotS
Spore coat protein CotS; Identified by similarity to SP:P46914; match to protein family HMM TIGR02906.
 
  
 0.577
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.565
CPF_2592
Mannose-6-phosphate isomerase domain protein; Identified by similarity to SP:Q07024.
 
  
 0.549
CPF_0267
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 
 0.496
CPF_0264
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 
 0.489
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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