STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPF_2493PTS system, lactose/cellobiose-specific IIB component; Identified by match to protein family HMM PF02302. (109 aa)    
Predicted Functional Partners:
CPF_2902
PTS system, lactose/cellobiose-specific IIA component; Identified by match to protein family HMM PF02255.
 
 0.999
CPF_2609
Glycosyl hydrolase, family 1; Identified by match to protein family HMM PF00232; Belongs to the glycosyl hydrolase 1 family.
 
 
 0.988
CPF_1923
Phosphocarrier, HPr family; Identified by similarity to SP:P07515; match to protein family HMM PF00381; match to protein family HMM TIGR01003.
    
  0.905
fruK
1-phosphofructokinase; Identified by similarity to SP:O31714; match to protein family HMM PF00294; match to protein family HMM TIGR03168; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.
 
  
 0.720
CPF_0069
Transcription antiterminator; Identified by similarity to SP:P15401; match to protein family HMM PF00874; match to protein family HMM PF03123.
 
  
 0.622
CPF_1785
PTS system, sucrose-specific IIBC component; Identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR01996.
  
  
 0.550
treB
PTS system, trehalose-specific IIBC component; Identified by similarity to SP:P36672; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01992.
  
  
 0.527
CPF_2492
Putative ethanolamine utilization protein EutH; Identified by match to protein family HMM PF04346.
     
 0.483
fruA
PTS system, fructose-specific, IIABC component; Identified by match to protein family HMM PF00359; match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR00848; match to protein family HMM TIGR01427.
 
  
 0.482
CPF_2494
Serine protease; Identified by match to protein family HMM PF00089; match to protein family HMM PF00595.
       0.447
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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