STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPF_2497Identified by match to protein family HMM PF05866. (210 aa)    
Predicted Functional Partners:
CPF_2498
Putative acyl-CoA thioesterase; Identified by similarity to SP:P29679; match to protein family HMM PF00657.
 
     0.842
CPF_2126
TPR domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
  
     0.771
CPF_1699
Conserved hypothetical protein.
  
    0.770
CPF_0653
hesB family protein; Selenoprotein. identified by match to protein family HMM TIGR01911.
  
     0.766
CPF_1704
Conserved hypothetical protein; Identified by similarity to GB:AAO35153.1; match to protein family HMM PF06803.
  
     0.753
CPF_1559
Putative adenylate cyclase; Identified by match to protein family HMM PF01928.
  
     0.746
CPF_2176
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
  
     0.713
CPF_0278
Conserved hypothetical protein; Identified by similarity to GB:AAK78295.1; match to protein family HMM PF08876.
  
     0.708
CPF_2124
Hypothetical protein; Identified by glimmer; putative.
  
     0.701
CPF_1920
Putative DNA polymerase III, epsilon subunit; Identified by match to protein family HMM PF00929.
 
     0.690
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.