Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CPF_2563Hypothetical protein; Identified by glimmer; putative. (405 aa)    
Predicted Functional Partners:
CPF_2564
Type IV pilus biogenesis protein PilN.
 
 
 0.994
CPF_2561
Hypothetical protein; Identified by glimmer; putative.
 
     0.951
CPF_2565
Type IV pilus assembly protein PilM; Identified by similarity to PIR:S77726; match to protein family HMM TIGR01175.
 
 
 0.950
CPF_2560
Prepilin-type N-terminal cleavage/methylation domain protein; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532.
  
  
 0.797
CPF_2562
Hypothetical protein; Identified by glimmer; putative.
  
  
 0.761
CPF_2569
Bacterial type II secretion system protein F; Identified by match to protein family HMM PF00482.
 
 
 
 0.710
CPF_2570
Identified by match to protein family HMM PF00437; match to protein family HMM PF05157.
  
 
 0.660
CPF_2559
Hypothetical protein; Identified by glimmer; putative.
       0.642
CPF_2571
Type IV leader peptidase family protein; Identified by match to protein family HMM PF01478; match to protein family HMM PF06750.
     
 0.602
CPF_2566
Putative type IV pilin; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532.
  
  
 0.577
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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