Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CPF_2570Identified by match to protein family HMM PF00437; match to protein family HMM PF05157. (562 aa)    
Predicted Functional Partners:
CPF_2569
Bacterial type II secretion system protein F; Identified by match to protein family HMM PF00482.
 
 
 0.983
CPF_2097
Putative pilus biogenesis protein; Identified by similarity to GB:AAA25733.1; match to protein family HMM PF00482.
 
 
 0.948
CPF_2571
Type IV leader peptidase family protein; Identified by match to protein family HMM PF01478; match to protein family HMM PF06750.
 
 
 0.942
CPF_2568
Putative type IV pilin; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532.
 
 
 0.936
CPF_2565
Type IV pilus assembly protein PilM; Identified by similarity to PIR:S77726; match to protein family HMM TIGR01175.
 
 
 0.896
CPF_2566
Putative type IV pilin; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532.
  
 
 0.790
CPF_2564
Type IV pilus biogenesis protein PilN.
  
 
 0.741
CPF_2572
Putative type IV pilin; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532.
  
 
 0.710
CPF_2562
Hypothetical protein; Identified by glimmer; putative.
  
 
 0.706
CPF_2432
Hypothetical protein; Identified by glimmer; putative.
   
  
 0.702
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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