Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CPF_2571Type IV leader peptidase family protein; Identified by match to protein family HMM PF01478; match to protein family HMM PF06750. (247 aa)    
Predicted Functional Partners:
CPF_2570
Identified by match to protein family HMM PF00437; match to protein family HMM PF05157.
 
 
 0.942
CPF_2569
Bacterial type II secretion system protein F; Identified by match to protein family HMM PF00482.
 
  
 0.941
CPF_2568
Putative type IV pilin; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532.
 
  
 0.919
CPF_2565
Type IV pilus assembly protein PilM; Identified by similarity to PIR:S77726; match to protein family HMM TIGR01175.
 
  
 0.901
CPF_2097
Putative pilus biogenesis protein; Identified by similarity to GB:AAA25733.1; match to protein family HMM PF00482.
 
  
 0.880
CPF_2098
Putative pilus biogenesis protein; Identified by match to protein family HMM PF00437.
 
 
 0.866
pilT
Twitching motility protein PilT; Identified by match to protein family HMM PF00437; match to protein family HMM TIGR01420.
 
   
 0.860
dprA
DNA protecting protein DprA; Identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732.
 
  
 0.767
CPF_2375
Putative comE operon protein 1; Identified by similarity to SP:P39694; match to protein family HMM PF00633; match to protein family HMM TIGR00426.
   
  
 0.726
CPF_2572
Putative type IV pilin; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532.
  
  
 0.662
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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