Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CPF_2589Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392; match to protein family HMM PF02080. (206 aa)    
Predicted Functional Partners:
CPF_0538
Glycine betaine/L-proline ABC transporter, permease/glycine betaine/L-proline-binding protein; Identified by match to protein family HMM PF00528; match to protein family HMM PF04069.
 
     0.570
CPF_2590
Conserved hypothetical protein; Identified by similarity to PIR:B97000.
       0.542
CPF_2588
Putative cadmium resistance transcriptional regulator CadC; Identified by similarity to SP:Q56405; match to protein family HMM PF01022.
       0.490
cadA
Cadmium-translocating P-type ATPase; Identified by similarity to SP:Q59465; match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525.
       0.472
CPF_0537
Glycine betaine/L-proline transport, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186.
 
   
 0.422
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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