Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CPF_2601Putative transcriptional regulator; Identified by similarity to SP:P06533; match to protein family HMM PF01381. (127 aa)    
Predicted Functional Partners:
CPF_2600
Hypothetical protein; Identified by glimmer; putative.
       0.584
CPF_2603
Putative resolvase; Identified by match to protein family HMM PF00239.
  
    0.461
CPF_2604
Site-specific recombinase, resolvase family; Identified by similarity to SP:P17867; match to protein family HMM PF00239; match to protein family HMM PF07508.
  
    0.447
CPF_2602
Hypothetical protein; Identified by glimmer; putative.
       0.438
hsdS
Type I restriction-modification enzyme, S subunit; Identified by match to protein family HMM PF01420.
  
  
 0.434
hsdM
Type I restriction-modification system, M subunit; Identified by match to protein family HMM PF02384; match to protein family HMM TIGR00497.
  
    0.424
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.