Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CPF_2658Conserved hypothetical protein; Identified by similarity to PIR:F97278; match to protein family HMM PF01266; match to protein family HMM PF07992. (533 aa)    
Predicted Functional Partners:
CPF_2659
Conserved hypothetical protein; Identified by similarity to PIR:G97278; match to protein family HMM PF07949.
       0.684
dacA
Conserved hypothetical protein TIGR00159; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria.
       0.684
ptb
Phosphate butyryltransferase; Identified by similarity to SP:Q05624; match to protein family HMM PF01515; match to protein family HMM TIGR02706.
       0.606
buk
Butyrate kinase; Catalyzes the conversion of butyryl-CoA through butyryl phosphate to butyrate; Belongs to the acetokinase family.
       0.581
CPF_2661
Conserved hypothetical protein; Identified by similarity to PIR:A97279.
       0.561
CPF_2662
Putative spore-cortex-lytic enzyme; Identified by similarity to SP:P50739; match to protein family HMM PF07486.
       0.502
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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