cwlD protein (Clostridium perfringens ATCC 13124)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

cwlD

N-acetylmuramoyl-L-alanine amidase CwlD; Identified by similarity to SP:P50864; match to protein family HMM PF01520; match to protein family HMM TIGR02883. (223 aa)

Predicted Functional Partners:

CPF_0111

0.930

CPF_1753

0.900

CPF_2677

0.602

CPF_1705

0.572

pdaA

0.522

rpsI

0.466

rplM

0.455

truA2

0.439

CPF_2277

0.432

spoIID

0.407

Your Current Organism:

Clostridium perfringens ATCC 13124

NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CPF_0111	CPF_1705	CPF_0111	CPF_1705	Putative N-acetylmuramoyl-L-alanine amidase; Identified by similarity to SP:P36548; match to protein family HMM PF01520.	Identified by match to protein family HMM PF01694.	0.572
CPF_0111	CPF_1753	CPF_0111	CPF_1753	Putative N-acetylmuramoyl-L-alanine amidase; Identified by similarity to SP:P36548; match to protein family HMM PF01520.	Putative N-acetylmuramoyl-L-alanine amidase; Identified by similarity to SP:Q02114; match to protein family HMM PF01520.	0.900
CPF_0111	cwlD	CPF_0111	CPF_2676	Putative N-acetylmuramoyl-L-alanine amidase; Identified by similarity to SP:P36548; match to protein family HMM PF01520.	N-acetylmuramoyl-L-alanine amidase CwlD; Identified by similarity to SP:P50864; match to protein family HMM PF01520; match to protein family HMM TIGR02883.	0.930
CPF_1705	CPF_0111	CPF_1705	CPF_0111	Identified by match to protein family HMM PF01694.	Putative N-acetylmuramoyl-L-alanine amidase; Identified by similarity to SP:P36548; match to protein family HMM PF01520.	0.572
CPF_1705	CPF_1753	CPF_1705	CPF_1753	Identified by match to protein family HMM PF01694.	Putative N-acetylmuramoyl-L-alanine amidase; Identified by similarity to SP:Q02114; match to protein family HMM PF01520.	0.572
CPF_1705	cwlD	CPF_1705	CPF_2676	Identified by match to protein family HMM PF01694.	N-acetylmuramoyl-L-alanine amidase CwlD; Identified by similarity to SP:P50864; match to protein family HMM PF01520; match to protein family HMM TIGR02883.	0.572
CPF_1753	CPF_0111	CPF_1753	CPF_0111	Putative N-acetylmuramoyl-L-alanine amidase; Identified by similarity to SP:Q02114; match to protein family HMM PF01520.	Putative N-acetylmuramoyl-L-alanine amidase; Identified by similarity to SP:P36548; match to protein family HMM PF01520.	0.900
CPF_1753	CPF_1705	CPF_1753	CPF_1705	Putative N-acetylmuramoyl-L-alanine amidase; Identified by similarity to SP:Q02114; match to protein family HMM PF01520.	Identified by match to protein family HMM PF01694.	0.572
CPF_1753	cwlD	CPF_1753	CPF_2676	Putative N-acetylmuramoyl-L-alanine amidase; Identified by similarity to SP:Q02114; match to protein family HMM PF01520.	N-acetylmuramoyl-L-alanine amidase CwlD; Identified by similarity to SP:P50864; match to protein family HMM PF01520; match to protein family HMM TIGR02883.	0.900
CPF_2277	cwlD	CPF_2277	CPF_2676	Putative stage IV sporulation protein; Identified by match to protein family HMM PF06898; match to protein family HMM TIGR02876.	N-acetylmuramoyl-L-alanine amidase CwlD; Identified by similarity to SP:P50864; match to protein family HMM PF01520; match to protein family HMM TIGR02883.	0.432
CPF_2277	spoIID	CPF_2277	CPF_2448	Putative stage IV sporulation protein; Identified by match to protein family HMM PF06898; match to protein family HMM TIGR02876.	Stage II sporulation protein D; Identified by similarity to SP:P07372; match to protein family HMM PF08486; match to protein family HMM TIGR02669; match to protein family HMM TIGR02870.	0.675
CPF_2677	cwlD	CPF_2677	CPF_2676	Identified by match to protein family HMM PF01895; match to protein family HMM PF02690; match to protein family HMM TIGR00704.	N-acetylmuramoyl-L-alanine amidase CwlD; Identified by similarity to SP:P50864; match to protein family HMM PF01520; match to protein family HMM TIGR02883.	0.602
CPF_2677	rplM	CPF_2677	CPF_2679	Identified by match to protein family HMM PF01895; match to protein family HMM PF02690; match to protein family HMM TIGR00704.	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.534
CPF_2677	rpsI	CPF_2677	CPF_2678	Identified by match to protein family HMM PF01895; match to protein family HMM PF02690; match to protein family HMM TIGR00704.	30S ribosomal protein S9; Identified by similarity to SP:P21470; match to protein family HMM PF00380; Belongs to the universal ribosomal protein uS9 family.	0.556
CPF_2677	truA2	CPF_2677	CPF_2680	Identified by match to protein family HMM PF01895; match to protein family HMM PF02690; match to protein family HMM TIGR00704.	tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.	0.419
cwlD	CPF_0111	CPF_2676	CPF_0111	N-acetylmuramoyl-L-alanine amidase CwlD; Identified by similarity to SP:P50864; match to protein family HMM PF01520; match to protein family HMM TIGR02883.	Putative N-acetylmuramoyl-L-alanine amidase; Identified by similarity to SP:P36548; match to protein family HMM PF01520.	0.930
cwlD	CPF_1705	CPF_2676	CPF_1705	N-acetylmuramoyl-L-alanine amidase CwlD; Identified by similarity to SP:P50864; match to protein family HMM PF01520; match to protein family HMM TIGR02883.	Identified by match to protein family HMM PF01694.	0.572
cwlD	CPF_1753	CPF_2676	CPF_1753	N-acetylmuramoyl-L-alanine amidase CwlD; Identified by similarity to SP:P50864; match to protein family HMM PF01520; match to protein family HMM TIGR02883.	Putative N-acetylmuramoyl-L-alanine amidase; Identified by similarity to SP:Q02114; match to protein family HMM PF01520.	0.900
cwlD	CPF_2277	CPF_2676	CPF_2277	N-acetylmuramoyl-L-alanine amidase CwlD; Identified by similarity to SP:P50864; match to protein family HMM PF01520; match to protein family HMM TIGR02883.	Putative stage IV sporulation protein; Identified by match to protein family HMM PF06898; match to protein family HMM TIGR02876.	0.432
cwlD	CPF_2677	CPF_2676	CPF_2677	N-acetylmuramoyl-L-alanine amidase CwlD; Identified by similarity to SP:P50864; match to protein family HMM PF01520; match to protein family HMM TIGR02883.	Identified by match to protein family HMM PF01895; match to protein family HMM PF02690; match to protein family HMM TIGR00704.	0.602

page 1 of 2

Server load: low (12%) [HD]

Permalink

Network

Neighborhood

Experiments

Co-occurrence

Databases

Co-expression

Textmining

Fusion

© STRING Consortium 2026

Credits

Access

Info

About