CPF_2677 protein (Clostridium perfringens ATCC 13124)

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Score

CPF_2677

Identified by match to protein family HMM PF01895; match to protein family HMM PF02690; match to protein family HMM TIGR00704. (537 aa)

Predicted Functional Partners:

cwlD

0.602

rpsI

0.556

rplM

0.534

truA2

0.419

Your Current Organism:

Clostridium perfringens ATCC 13124

NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CPF_2677	cwlD	CPF_2677	CPF_2676	Identified by match to protein family HMM PF01895; match to protein family HMM PF02690; match to protein family HMM TIGR00704.	N-acetylmuramoyl-L-alanine amidase CwlD; Identified by similarity to SP:P50864; match to protein family HMM PF01520; match to protein family HMM TIGR02883.	0.602
CPF_2677	rplM	CPF_2677	CPF_2679	Identified by match to protein family HMM PF01895; match to protein family HMM PF02690; match to protein family HMM TIGR00704.	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.534
CPF_2677	rpsI	CPF_2677	CPF_2678	Identified by match to protein family HMM PF01895; match to protein family HMM PF02690; match to protein family HMM TIGR00704.	30S ribosomal protein S9; Identified by similarity to SP:P21470; match to protein family HMM PF00380; Belongs to the universal ribosomal protein uS9 family.	0.556
CPF_2677	truA2	CPF_2677	CPF_2680	Identified by match to protein family HMM PF01895; match to protein family HMM PF02690; match to protein family HMM TIGR00704.	tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.	0.419
cwlD	CPF_2677	CPF_2676	CPF_2677	N-acetylmuramoyl-L-alanine amidase CwlD; Identified by similarity to SP:P50864; match to protein family HMM PF01520; match to protein family HMM TIGR02883.	Identified by match to protein family HMM PF01895; match to protein family HMM PF02690; match to protein family HMM TIGR00704.	0.602
cwlD	rplM	CPF_2676	CPF_2679	N-acetylmuramoyl-L-alanine amidase CwlD; Identified by similarity to SP:P50864; match to protein family HMM PF01520; match to protein family HMM TIGR02883.	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.455
cwlD	rpsI	CPF_2676	CPF_2678	N-acetylmuramoyl-L-alanine amidase CwlD; Identified by similarity to SP:P50864; match to protein family HMM PF01520; match to protein family HMM TIGR02883.	30S ribosomal protein S9; Identified by similarity to SP:P21470; match to protein family HMM PF00380; Belongs to the universal ribosomal protein uS9 family.	0.466
cwlD	truA2	CPF_2676	CPF_2680	N-acetylmuramoyl-L-alanine amidase CwlD; Identified by similarity to SP:P50864; match to protein family HMM PF01520; match to protein family HMM TIGR02883.	tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.	0.439
rplM	CPF_2677	CPF_2679	CPF_2677	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Identified by match to protein family HMM PF01895; match to protein family HMM PF02690; match to protein family HMM TIGR00704.	0.534
rplM	cwlD	CPF_2679	CPF_2676	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	N-acetylmuramoyl-L-alanine amidase CwlD; Identified by similarity to SP:P50864; match to protein family HMM PF01520; match to protein family HMM TIGR02883.	0.455
rplM	rpsI	CPF_2679	CPF_2678	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	30S ribosomal protein S9; Identified by similarity to SP:P21470; match to protein family HMM PF00380; Belongs to the universal ribosomal protein uS9 family.	0.998
rplM	truA2	CPF_2679	CPF_2680	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.	0.706
rpsI	CPF_2677	CPF_2678	CPF_2677	30S ribosomal protein S9; Identified by similarity to SP:P21470; match to protein family HMM PF00380; Belongs to the universal ribosomal protein uS9 family.	Identified by match to protein family HMM PF01895; match to protein family HMM PF02690; match to protein family HMM TIGR00704.	0.556
rpsI	cwlD	CPF_2678	CPF_2676	30S ribosomal protein S9; Identified by similarity to SP:P21470; match to protein family HMM PF00380; Belongs to the universal ribosomal protein uS9 family.	N-acetylmuramoyl-L-alanine amidase CwlD; Identified by similarity to SP:P50864; match to protein family HMM PF01520; match to protein family HMM TIGR02883.	0.466
rpsI	rplM	CPF_2678	CPF_2679	30S ribosomal protein S9; Identified by similarity to SP:P21470; match to protein family HMM PF00380; Belongs to the universal ribosomal protein uS9 family.	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.998
rpsI	truA2	CPF_2678	CPF_2680	30S ribosomal protein S9; Identified by similarity to SP:P21470; match to protein family HMM PF00380; Belongs to the universal ribosomal protein uS9 family.	tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.	0.734
truA2	CPF_2677	CPF_2680	CPF_2677	tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.	Identified by match to protein family HMM PF01895; match to protein family HMM PF02690; match to protein family HMM TIGR00704.	0.419
truA2	cwlD	CPF_2680	CPF_2676	tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.	N-acetylmuramoyl-L-alanine amidase CwlD; Identified by similarity to SP:P50864; match to protein family HMM PF01520; match to protein family HMM TIGR02883.	0.439
truA2	rplM	CPF_2680	CPF_2679	tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.706
truA2	rpsI	CPF_2680	CPF_2678	tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.	30S ribosomal protein S9; Identified by similarity to SP:P21470; match to protein family HMM PF00380; Belongs to the universal ribosomal protein uS9 family.	0.734

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