Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CPF_2768Identified by match to protein family HMM PF02016. (293 aa)    
Predicted Functional Partners:
CPF_2767
Putative cation transporter; Identified by match to protein family HMM PF01544.
       0.664
CPF_2766
Conserved hypothetical protein; Identified by similarity to GB:AAO34865.1.
       0.496
CPF_0259
Putative beta-N-acetylhexosaminidase; Identified by similarity to GB:BAA32403.1; match to protein family HMM PF00933; match to protein family HMM PF01915; match to protein family HMM TIGR01167.
 
   
 0.487
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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