CPF_2801 protein (Clostridium perfringens ATCC 13124)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CPF_2801

S4 domain protein; Identified by match to protein family HMM PF01479. (86 aa)

Predicted Functional Partners:

fbpA

0.897

rplS

0.889

rplQ

0.854

rpmB

0.841

rplB

0.836

rpmA

0.832

rplT

0.831

rpmF

0.825

rpmI

0.825

rplU

0.825

Your Current Organism:

Clostridium perfringens ATCC 13124

NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CPF_2801	fbpA	CPF_2801	CPF_2101	S4 domain protein; Identified by match to protein family HMM PF01479.	Fibronectin-binding protein; Identified by similarity to GB:AAM73699.1; match to protein family HMM PF05670; match to protein family HMM PF05833.	0.897
CPF_2801	rplB	CPF_2801	CPF_2711	S4 domain protein; Identified by match to protein family HMM PF01479.	50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	0.836
CPF_2801	rplQ	CPF_2801	CPF_2684	S4 domain protein; Identified by match to protein family HMM PF01479.	50S ribosomal protein L17; Identified by similarity to SP:P07843; match to protein family HMM PF01196; match to protein family HMM TIGR00059.	0.854
CPF_2801	rplS	CPF_2801	CPF_1962	S4 domain protein; Identified by match to protein family HMM PF01479.	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.889
CPF_2801	rplT	CPF_2801	CPF_2144	S4 domain protein; Identified by match to protein family HMM PF01479.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.831
CPF_2801	rplU	CPF_2801	CPF_2385	S4 domain protein; Identified by match to protein family HMM PF01479.	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.825
CPF_2801	rpmA	CPF_2801	CPF_2383	S4 domain protein; Identified by match to protein family HMM PF01479.	50S ribosomal protein L27; Identified by similarity to SP:P05657; match to protein family HMM PF01016; match to protein family HMM TIGR00062; Belongs to the bacterial ribosomal protein bL27 family.	0.832
CPF_2801	rpmB	CPF_2801	CPF_1987	S4 domain protein; Identified by match to protein family HMM PF01479.	50S ribosomal protein L28; Identified by similarity to SP:P37807; match to protein family HMM PF00830; match to protein family HMM TIGR00009; Belongs to the bacterial ribosomal protein bL28 family.	0.841
CPF_2801	rpmF	CPF_2801	CPF_1975	S4 domain protein; Identified by match to protein family HMM PF01479.	50S ribosomal protein L32; Identified by similarity to SP:O34687; match to protein family HMM PF01783; match to protein family HMM TIGR01031; Belongs to the bacterial ribosomal protein bL32 family.	0.825
CPF_2801	rpmI	CPF_2801	CPF_2145	S4 domain protein; Identified by match to protein family HMM PF01479.	50S ribosomal protein L35; Identified by similarity to SP:P55874; match to protein family HMM PF01632; match to protein family HMM TIGR00001; Belongs to the bacterial ribosomal protein bL35 family.	0.825
fbpA	CPF_2801	CPF_2101	CPF_2801	Fibronectin-binding protein; Identified by similarity to GB:AAM73699.1; match to protein family HMM PF05670; match to protein family HMM PF05833.	S4 domain protein; Identified by match to protein family HMM PF01479.	0.897
fbpA	rplB	CPF_2101	CPF_2711	Fibronectin-binding protein; Identified by similarity to GB:AAM73699.1; match to protein family HMM PF05670; match to protein family HMM PF05833.	50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	0.939
fbpA	rplQ	CPF_2101	CPF_2684	Fibronectin-binding protein; Identified by similarity to GB:AAM73699.1; match to protein family HMM PF05670; match to protein family HMM PF05833.	50S ribosomal protein L17; Identified by similarity to SP:P07843; match to protein family HMM PF01196; match to protein family HMM TIGR00059.	0.543
fbpA	rplS	CPF_2101	CPF_1962	Fibronectin-binding protein; Identified by similarity to GB:AAM73699.1; match to protein family HMM PF05670; match to protein family HMM PF05833.	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.617
fbpA	rplT	CPF_2101	CPF_2144	Fibronectin-binding protein; Identified by similarity to GB:AAM73699.1; match to protein family HMM PF05670; match to protein family HMM PF05833.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.543
fbpA	rplU	CPF_2101	CPF_2385	Fibronectin-binding protein; Identified by similarity to GB:AAM73699.1; match to protein family HMM PF05670; match to protein family HMM PF05833.	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.543
fbpA	rpmA	CPF_2101	CPF_2383	Fibronectin-binding protein; Identified by similarity to GB:AAM73699.1; match to protein family HMM PF05670; match to protein family HMM PF05833.	50S ribosomal protein L27; Identified by similarity to SP:P05657; match to protein family HMM PF01016; match to protein family HMM TIGR00062; Belongs to the bacterial ribosomal protein bL27 family.	0.543
fbpA	rpmB	CPF_2101	CPF_1987	Fibronectin-binding protein; Identified by similarity to GB:AAM73699.1; match to protein family HMM PF05670; match to protein family HMM PF05833.	50S ribosomal protein L28; Identified by similarity to SP:P37807; match to protein family HMM PF00830; match to protein family HMM TIGR00009; Belongs to the bacterial ribosomal protein bL28 family.	0.543
fbpA	rpmF	CPF_2101	CPF_1975	Fibronectin-binding protein; Identified by similarity to GB:AAM73699.1; match to protein family HMM PF05670; match to protein family HMM PF05833.	50S ribosomal protein L32; Identified by similarity to SP:O34687; match to protein family HMM PF01783; match to protein family HMM TIGR01031; Belongs to the bacterial ribosomal protein bL32 family.	0.544
fbpA	rpmI	CPF_2101	CPF_2145	Fibronectin-binding protein; Identified by similarity to GB:AAM73699.1; match to protein family HMM PF05670; match to protein family HMM PF05833.	50S ribosomal protein L35; Identified by similarity to SP:P55874; match to protein family HMM PF01632; match to protein family HMM TIGR00001; Belongs to the bacterial ribosomal protein bL35 family.	0.543