Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CPF_2839Conserved hypothetical protein; Identified by similarity to PIR:C97267. (540 aa)    
Predicted Functional Partners:
CPF_2126
TPR domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
  
    0.775
CPF_1933
PRC-barrel domain protein; Identified by match to protein family HMM PF05239; match to protein family HMM TIGR02888.
  
     0.762
CPF_2975
Conserved hypothetical protein; Identified by similarity to PIR:E97356.
  
     0.759
CPF_2055
Oxidoreductase family protein; Identified by similarity to SP:P25983.
  
     0.750
spoIIIAF
Stage III sporulation protein AF; Identified by match to protein family HMM PF09581; match to protein family HMM TIGR02896.
  
     0.745
CPF_2479
lysM domain protein; Identified by match to protein family HMM PF01476.
  
     0.742
CPF_1558
Conserved hypothetical protein; Identified by similarity to PIR:A96980.
  
     0.740
yabQ
Spore cortex biosynthesis protein YabQ; Identified by similarity to PIR:E97294; match to protein family HMM TIGR02893.
  
     0.733
CPF_1920
Putative DNA polymerase III, epsilon subunit; Identified by match to protein family HMM PF00929.
  
     0.732
CPF_2176
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
  
     0.732
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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