Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CPF_2843Hydrolase, TatD family; Identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010. (256 aa)    
Predicted Functional Partners:
metG-2
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
 
 0.888
CPF_2844
Conserved hypothetical protein; Identified by similarity to PIR:AC1723; match to protein family HMM PF04286.
       0.800
ksgA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
 
  
 0.714
CPF_2842
3D/G5 domain protein; Identified by match to protein family HMM PF03990; match to protein family HMM PF06725; match to protein family HMM PF07501.
     
 0.664
rnmV
Primase homolog; Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step.
  
  
 0.598
CPF_2845
Cyclic nucleotide-binding domain protein; Identified by match to protein family HMM PF00027.
       0.545
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
 
   
 0.453
CPF_2839
Conserved hypothetical protein; Identified by similarity to PIR:C97267.
       0.446
CPF_1755
3D/G5 domain protein; Identified by match to protein family HMM PF03990; match to protein family HMM PF06725; match to protein family HMM PF07501.
     
 0.440
CPF_1199
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
   0.439
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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