CPF_2845 protein (Clostridium perfringens ATCC 13124)

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CPF_2845

Cyclic nucleotide-binding domain protein; Identified by match to protein family HMM PF00027. (226 aa)

Predicted Functional Partners:

CPF_2844

0.664

CPF_2843

0.545

rpoB

0.527

rpoD

0.518

rpoC

0.504

rpoA

0.495

rpoZ

0.476

CPF_2556

0.457

Your Current Organism:

Clostridium perfringens ATCC 13124

NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CPF_2556	CPF_2845	CPF_2556	CPF_2845	Major facilitator family transporter; Identified by match to protein family HMM PF07690.	Cyclic nucleotide-binding domain protein; Identified by match to protein family HMM PF00027.	0.457
CPF_2843	CPF_2844	CPF_2843	CPF_2844	Hydrolase, TatD family; Identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010.	Conserved hypothetical protein; Identified by similarity to PIR:AC1723; match to protein family HMM PF04286.	0.800
CPF_2843	CPF_2845	CPF_2843	CPF_2845	Hydrolase, TatD family; Identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010.	Cyclic nucleotide-binding domain protein; Identified by match to protein family HMM PF00027.	0.545
CPF_2844	CPF_2843	CPF_2844	CPF_2843	Conserved hypothetical protein; Identified by similarity to PIR:AC1723; match to protein family HMM PF04286.	Hydrolase, TatD family; Identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010.	0.800
CPF_2844	CPF_2845	CPF_2844	CPF_2845	Conserved hypothetical protein; Identified by similarity to PIR:AC1723; match to protein family HMM PF04286.	Cyclic nucleotide-binding domain protein; Identified by match to protein family HMM PF00027.	0.664
CPF_2845	CPF_2556	CPF_2845	CPF_2556	Cyclic nucleotide-binding domain protein; Identified by match to protein family HMM PF00027.	Major facilitator family transporter; Identified by match to protein family HMM PF07690.	0.457
CPF_2845	CPF_2843	CPF_2845	CPF_2843	Cyclic nucleotide-binding domain protein; Identified by match to protein family HMM PF00027.	Hydrolase, TatD family; Identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010.	0.545
CPF_2845	CPF_2844	CPF_2845	CPF_2844	Cyclic nucleotide-binding domain protein; Identified by match to protein family HMM PF00027.	Conserved hypothetical protein; Identified by similarity to PIR:AC1723; match to protein family HMM PF04286.	0.664
CPF_2845	rpoA	CPF_2845	CPF_2685	Cyclic nucleotide-binding domain protein; Identified by match to protein family HMM PF00027.	DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.495
CPF_2845	rpoB	CPF_2845	CPF_2722	Cyclic nucleotide-binding domain protein; Identified by match to protein family HMM PF00027.	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.527
CPF_2845	rpoC	CPF_2845	CPF_2721	Cyclic nucleotide-binding domain protein; Identified by match to protein family HMM PF00027.	DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.504
CPF_2845	rpoD	CPF_2845	CPF_2264	Cyclic nucleotide-binding domain protein; Identified by match to protein family HMM PF00027.	RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.518
CPF_2845	rpoZ	CPF_2845	CPF_2000	Cyclic nucleotide-binding domain protein; Identified by match to protein family HMM PF00027.	DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.476
rpoA	CPF_2845	CPF_2685	CPF_2845	DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Cyclic nucleotide-binding domain protein; Identified by match to protein family HMM PF00027.	0.495
rpoA	rpoB	CPF_2685	CPF_2722	DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.998
rpoA	rpoC	CPF_2685	CPF_2721	DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.998
rpoA	rpoD	CPF_2685	CPF_2264	DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.962
rpoA	rpoZ	CPF_2685	CPF_2000	DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.994
rpoB	CPF_2845	CPF_2722	CPF_2845	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Cyclic nucleotide-binding domain protein; Identified by match to protein family HMM PF00027.	0.527
rpoB	rpoA	CPF_2722	CPF_2685	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.998

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