CPF_2864 protein (Clostridium perfringens ATCC 13124)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CPF_2864

Rhodanese-like domain protein; Identified by match to protein family HMM PF00581. (109 aa)

Predicted Functional Partners:

sodF

0.571

ybeY

0.539

rpsQ

0.510

rplQ

0.502

rplU

0.493

CPF_0739

0.450

rplK

0.449

CPF_2191

0.423

folBK

0.421

rplM

0.420

Your Current Organism:

Clostridium perfringens ATCC 13124

NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CPF_0739	CPF_2864	CPF_0739	CPF_2864	Putative cytochrome C-type biogenesis protein; Identified by match to protein family HMM PF00085; match to protein family HMM PF00578; match to protein family HMM PF02683; match to protein family HMM PF08534.	Rhodanese-like domain protein; Identified by match to protein family HMM PF00581.	0.450
CPF_0739	folBK	CPF_0739	CPF_1277	Putative cytochrome C-type biogenesis protein; Identified by match to protein family HMM PF00085; match to protein family HMM PF00578; match to protein family HMM PF02683; match to protein family HMM PF08534.	Dihydroneopterin aldolase/2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.	0.420
CPF_2191	CPF_2864	CPF_2191	CPF_2864	Identified by match to protein family HMM PF00753.	Rhodanese-like domain protein; Identified by match to protein family HMM PF00581.	0.423
CPF_2191	ybeY	CPF_2191	CPF_2275	Identified by match to protein family HMM PF00753.	Conserved hypothetical protein TIGR00043; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.	0.466
CPF_2864	CPF_0739	CPF_2864	CPF_0739	Rhodanese-like domain protein; Identified by match to protein family HMM PF00581.	Putative cytochrome C-type biogenesis protein; Identified by match to protein family HMM PF00085; match to protein family HMM PF00578; match to protein family HMM PF02683; match to protein family HMM PF08534.	0.450
CPF_2864	CPF_2191	CPF_2864	CPF_2191	Rhodanese-like domain protein; Identified by match to protein family HMM PF00581.	Identified by match to protein family HMM PF00753.	0.423
CPF_2864	folBK	CPF_2864	CPF_1277	Rhodanese-like domain protein; Identified by match to protein family HMM PF00581.	Dihydroneopterin aldolase/2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.	0.421
CPF_2864	rplK	CPF_2864	CPF_2726	Rhodanese-like domain protein; Identified by match to protein family HMM PF00581.	50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	0.449
CPF_2864	rplM	CPF_2864	CPF_2679	Rhodanese-like domain protein; Identified by match to protein family HMM PF00581.	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.420
CPF_2864	rplQ	CPF_2864	CPF_2684	Rhodanese-like domain protein; Identified by match to protein family HMM PF00581.	50S ribosomal protein L17; Identified by similarity to SP:P07843; match to protein family HMM PF01196; match to protein family HMM TIGR00059.	0.502
CPF_2864	rplU	CPF_2864	CPF_2385	Rhodanese-like domain protein; Identified by match to protein family HMM PF00581.	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.493
CPF_2864	rpsQ	CPF_2864	CPF_2705	Rhodanese-like domain protein; Identified by match to protein family HMM PF00581.	30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.510
CPF_2864	sodF	CPF_2864	CPF_1446	Rhodanese-like domain protein; Identified by match to protein family HMM PF00581.	Mn/Fe superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	0.571
CPF_2864	ybeY	CPF_2864	CPF_2275	Rhodanese-like domain protein; Identified by match to protein family HMM PF00581.	Conserved hypothetical protein TIGR00043; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.	0.539
folBK	CPF_0739	CPF_1277	CPF_0739	Dihydroneopterin aldolase/2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.	Putative cytochrome C-type biogenesis protein; Identified by match to protein family HMM PF00085; match to protein family HMM PF00578; match to protein family HMM PF02683; match to protein family HMM PF08534.	0.420
folBK	CPF_2864	CPF_1277	CPF_2864	Dihydroneopterin aldolase/2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.	Rhodanese-like domain protein; Identified by match to protein family HMM PF00581.	0.421
rplK	CPF_2864	CPF_2726	CPF_2864	50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	Rhodanese-like domain protein; Identified by match to protein family HMM PF00581.	0.449
rplK	rplM	CPF_2726	CPF_2679	50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.992
rplK	rplQ	CPF_2726	CPF_2684	50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	50S ribosomal protein L17; Identified by similarity to SP:P07843; match to protein family HMM PF01196; match to protein family HMM TIGR00059.	0.989
rplK	rplU	CPF_2726	CPF_2385	50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.987