Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CPF_2866[2Fe-2S]-binding domain protein; Identified by match to protein family HMM PF04324. (71 aa)    
Predicted Functional Partners:
CPF_1076
[Fe] hydrogenase; Identified by match to protein family HMM PF00037; match to protein family HMM PF00301; match to protein family HMM PF02256; match to protein family HMM PF02906; match to protein family HMM PF02915; match to protein family HMM TIGR02512.
  
 
 0.805
hemD
uroporphyrinogen-III methyltransferase/synthase; Identified by similarity to GB:AAK00606.1; match to protein family HMM PF00590; match to protein family HMM PF02602; match to protein family HMM TIGR01469.
  
  
 0.613
CPF_2889
Identified by match to protein family HMM PF00717; match to protein family HMM PF01381.
  
     0.581
hcp
Hybrid cluster protein; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.
  
  
 0.549
CPF_0650
TPR domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
  
     0.547
CPF_2234
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515.
  
     0.524
CPF_2336
Putative membrane protein.
  
     0.523
CPF_1143
Conserved hypothetical protein; Identified by similarity to GB:BAC14467.1; match to protein family HMM PF08757.
  
     0.486
CPF_0779
Rubredoxin; Identified by match to protein family HMM PF00301.
  
 
 0.481
rubR2
Rubredoxin; Identified by similarity to SP:P14072; match to protein family HMM PF00301.
  
 
 0.481
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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