Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CPF_2890Conserved hypothetical protein. (124 aa)    
Predicted Functional Partners:
CPF_2889
Identified by match to protein family HMM PF00717; match to protein family HMM PF01381.
       0.773
CPF_2891
Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
       0.770
cspA
Serine protease A; Identified by similarity to GB:BAB60711.1; match to protein family HMM PF00082.
       0.511
cspB
Protease CspB; Identified by similarity to GB:BAB60712.1; match to protein family HMM PF00082; Belongs to the peptidase S8 family.
       0.494
cspC
Serine protease C; Identified by similarity to GB:BAB60713.1; match to protein family HMM PF00082.
       0.467
sleC
Spore cortex-lytic enzyme SleC; Identified by similarity to PIR:I40824; match to protein family HMM PF01471.
       0.425
CPF_2892
Conserved hypothetical protein; Identified by similarity to PIR:A97230.
       0.422
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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