Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CPF_2899Conserved domain protein; Identified by similarity to GB:AAO35287.1. (218 aa)    
Predicted Functional Partners:
ftsK
DNA translocase FtsK; Identified by similarity to SP:P21458; match to protein family HMM PF01580; match to protein family HMM PF09397; Belongs to the FtsK/SpoIIIE/SftA family.
   
 
 0.705
CPF_1875
Conserved hypothetical protein; Identified by similarity to GB:AAO35548.1.
 
    0.581
CPF_1841
Hypothetical protein; Identified by glimmer; putative.
 
    0.572
CPF_0631
Identified by match to protein family HMM PF04326.
  
     0.513
CPF_0577
Conserved hypothetical protein.
  
     0.503
CPF_0495
Conserved hypothetical protein; Identified by similarity to GB:BAC14481.1; match to protein family HMM TIGR01167.
  
 
 0.468
CPF_1801
Conserved hypothetical protein; Identified by similarity to GB:AAS39397.1.
 
    0.443
CPF_1583
Phage protein, QlrG family; Identified by match to protein family HMM TIGR01560.
  
 
 0.441
CPF_2935
Conserved hypothetical protein; Identified by similarity to GB:AAO34793.1; match to protein family HMM PF08761.
 
     0.426
CPF_0232
Conserved domain protein.
 
  
 0.423
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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