Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CPF_2929Conserved hypothetical protein; Identified by similarity to PIR:C97100; match to protein family HMM PF06555. (213 aa)    
Predicted Functional Partners:
CPF_0560
Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037; match to protein family HMM PF02754.
  
 
 0.671
CPF_1693
Sulfite reductase, iron-sulfur subunit; Identified by similarity to SP:P26474; match to protein family HMM TIGR02910.
  
 
 0.671
CPF_1789
Anaerobic sulfite reductase, A subunit; Identified by similarity to SP:P26474; match to protein family HMM TIGR02910.
  
 
 0.671
nifJ
Pyruvate-flavodoxin oxidoreductase; Identified by similarity to SP:P19543; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.
     
 0.627
CPF_2930
SEC-C domain protein; Identified by match to protein family HMM PF02810.
   
   0.547
CPF_2928
Conserved hypothetical protein; Identified by similarity to GB:AAO75282.1.
 
     0.496
CPF_2932
Identified by match to protein family HMM PF00753.
       0.486
rlmH
Alpha/beta knot family protein; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.
       0.473
murA-2
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
       0.451
CPF_1396
Conserved hypothetical protein; Identified by similarity to GB:AAO35411.1.
  
     0.410
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
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