Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CPF_2979Conserved hypothetical protein; Identified by similarity to GB:AAM25886.1; match to protein family HMM PF06107. (70 aa)    
Predicted Functional Partners:
CPF_1942
Conserved hypothetical protein; Identified by similarity to PIR:B97122; match to protein family HMM PF04296.
  
     0.754
CPF_2032
Conserved hypothetical protein; Identified by similarity to SP:Q97IG2; match to protein family HMM PF06135; Belongs to the UPF0297 family.
  
     0.713
CPF_2981
Conserved hypothetical protein; Identified by similarity to GB:AAM24878.1.
       0.691
CPF_2980
Mechanosensitive ion channel family protein; Identified by match to protein family HMM PF00924.
       0.679
ychF
GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.
  
  
 0.671
CPF_1968
DNA-binding protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein.
  
     0.636
ytvI
Sporulation integral membrane protein YtvI; Identified by match to protein family HMM PF01594; match to protein family HMM TIGR02872.
 
    0.635
rpsF
30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
       0.625
CPF_2262
Conserved hypothetical protein; Identified by similarity to PIR:F97060; match to protein family HMM PF04816.
  
     0.608
CPF_2973
DHH family protein; Has phosphodiesterase (PDE) activity against cyclic-di-AMP (c-di-AMP); Belongs to the GdpP/PdeA phosphodiesterase family.
 
     0.584
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.