Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ytvISporulation integral membrane protein YtvI; Identified by match to protein family HMM PF01594; match to protein family HMM TIGR02872. (354 aa)    
Predicted Functional Partners:
CPF_2983
Identified by match to protein family HMM PF00266; match to protein family HMM TIGR01977.
       0.817
CPF_2982
Translocator protein, LysE family; Identified by match to protein family HMM PF01810.
       0.777
yyaC-2
Putative sporulation protein YyaC; Identified by similarity to GB:AAO34757.1; match to protein family HMM PF06866; match to protein family HMM TIGR02841.
  
    0.740
CPF_2979
Conserved hypothetical protein; Identified by similarity to GB:AAM25886.1; match to protein family HMM PF06107.
 
    0.635
CPF_2981
Conserved hypothetical protein; Identified by similarity to GB:AAM24878.1.
       0.633
CPF_2980
Mechanosensitive ion channel family protein; Identified by match to protein family HMM PF00924.
  
    0.496
ylbJ
Sporulation integral membrane protein YlbJ; Identified by match to protein family HMM PF07670; match to protein family HMM TIGR02871.
  
    0.483
rpsF
30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
       0.473
rpsR
30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
       0.455
Your Current Organism:
Clostridium perfringens ATCC 13124
NCBI taxonomy Id: 195103
Other names: C. perfringens ATCC 13124, Clostridium perfringens str. ATCC 13124, Clostridium perfringens strain ATCC 13124
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.