STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN97_00800Phage-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (175 aa)    
Predicted Functional Partners:
CN97_00795
DNA packaging protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.920
CN97_00700
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.653
CN97_00785
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.488
CN97_00790
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.488
CN97_00775
Coat protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.446
CN97_00780
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.435
CN97_00755
Head morphogenesis protein SPP1; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.431
lysM
Peptidoglycan-binding protein LysM; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.416
CN97_00765
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.411
Your Current Organism:
Haematobacter massiliensis
NCBI taxonomy Id: 195105
Other names: CCUG 47968, CIP 107725, H. massiliensis, Haematobacter massiliensis Heisel et al. 2007, Rhodobacter massiliensis, Rhodobacter massiliensis Greub and Raoult 2006, cf. Rhodobacter sp. Framboise, strain Framboise
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.