STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GalEUDP-glucose 4-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NAD(P)-dependent epimerase/dehydratase family. (343 aa)    
Predicted Functional Partners:
CN97_13320
Aldose epimerase; Converts alpha-aldose to the beta-anomer.
 
  
 0.950
galU
UTP--glucose-1-phosphate uridylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.789
CN97_02230
Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.685
cpsB
Mannose-1-phosphate guanyltransferase; Capsular polysaccharide colanic acid biosynthesis protein; catalyzes the formation of GDP-mannose from GTP and alpha-D-mannose 1-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the mannose-6-phosphate isomerase type 2 family.
 
  
 0.682
CN97_16560
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.676
CN97_16595
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.635
rfbB
dTDP-glucose 4,6-dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
 
  
0.593
CN97_02250
Peptidase S54; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.574
cysC
Adenylyltransferase; Catalyzes the synthesis of activated sulfate.
 
  
 0.550
CN97_16620
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.542
Your Current Organism:
Haematobacter massiliensis
NCBI taxonomy Id: 195105
Other names: CCUG 47968, CIP 107725, H. massiliensis, Haematobacter massiliensis Heisel et al. 2007, Rhodobacter massiliensis, Rhodobacter massiliensis Greub and Raoult 2006, cf. Rhodobacter sp. Framboise, strain Framboise
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