STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN97_05325Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (218 aa)    
Predicted Functional Partners:
CN97_14095
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.709
CN97_11485
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.657
CN97_05335
MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.466
CN97_05340
Transcription initiation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.447
CN97_05345
Deaminase/reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.418
Your Current Organism:
Haematobacter massiliensis
NCBI taxonomy Id: 195105
Other names: CCUG 47968, CIP 107725, H. massiliensis, Haematobacter massiliensis Heisel et al. 2007, Rhodobacter massiliensis, Rhodobacter massiliensis Greub and Raoult 2006, cf. Rhodobacter sp. Framboise, strain Framboise
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.