STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN97_05335MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (167 aa)    
Predicted Functional Partners:
CN97_05345
Deaminase/reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.767
CN97_05340
Transcription initiation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.737
CN97_18330
HxlR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.604
CN97_13495
HxlR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.562
CN97_05325
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.466
CN97_18325
3-beta hydroxysteroid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.457
CN97_05295
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.455
CN97_13885
Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.417
Your Current Organism:
Haematobacter massiliensis
NCBI taxonomy Id: 195105
Other names: CCUG 47968, CIP 107725, H. massiliensis, Haematobacter massiliensis Heisel et al. 2007, Rhodobacter massiliensis, Rhodobacter massiliensis Greub and Raoult 2006, cf. Rhodobacter sp. Framboise, strain Framboise
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.