STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN97_11120Lytic transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (385 aa)    
Predicted Functional Partners:
CN97_11125
Conjugal transfer protein TraF; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.954
CN97_11130
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.942
CN97_11145
Type II secretion system protein E; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.908
CN97_11140
Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.907
CN97_11135
Conjugal transfer protein TrbG; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.904
CN97_11155
Conjugal transfer protein TrbL; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.902
CN97_11115
Type IV secretion system protein B4; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.875
CN97_11110
Type IV secretion protein VirB3; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.873
CN97_11105
VIRB2 type IV secretion; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.866
CN97_11095
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.821
Your Current Organism:
Haematobacter massiliensis
NCBI taxonomy Id: 195105
Other names: CCUG 47968, CIP 107725, H. massiliensis, Haematobacter massiliensis Heisel et al. 2007, Rhodobacter massiliensis, Rhodobacter massiliensis Greub and Raoult 2006, cf. Rhodobacter sp. Framboise, strain Framboise
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.