CN97_17275 protein (Haematobacter massiliensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN97_17275

Manganese/iron transporter ATP-binding protein; With SitACD is involved in the transport of manganese and iron; Derived by automated computational analysis using gene prediction method: Protein Homology. (362 aa)

Predicted Functional Partners:

CN97_17270

0.999

CN97_17280

0.998

CN97_17285

0.998

CN97_19640

0.912

CN97_19625

0.885

CN97_19630

0.643

fur-2

0.548

CN97_17265

0.547

CN97_17290

0.448

CN97_03465

0.444

Your Current Organism:

Haematobacter massiliensis

NCBI taxonomy Id: 195105
Other names: CCUG 47968, CIP 107725, H. massiliensis, Haematobacter massiliensis Heisel et al. 2007, Rhodobacter massiliensis, Rhodobacter massiliensis Greub and Raoult 2006, cf. Rhodobacter sp. Framboise, strain Framboise

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN97_03465	CN97_17270	CN97_03465	CN97_17270	Manganese transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 9 family.	0.597
CN97_03465	CN97_17275	CN97_03465	CN97_17275	Manganese transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Manganese/iron transporter ATP-binding protein; With SitACD is involved in the transport of manganese and iron; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.444
CN97_03465	CN97_19630	CN97_03465	CN97_19630	Manganese transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fur family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Fur family.	0.524
CN97_03465	fur-2	CN97_03465	CN97_11880	Manganese transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fur family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Fur family.	0.536
CN97_17265	CN97_17270	CN97_17265	CN97_17270	Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 9 family.	0.547
CN97_17265	CN97_17275	CN97_17265	CN97_17275	Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Manganese/iron transporter ATP-binding protein; With SitACD is involved in the transport of manganese and iron; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.547
CN97_17265	CN97_17280	CN97_17265	CN97_17280	Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.547
CN97_17265	CN97_17285	CN97_17265	CN97_17285	Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.547
CN97_17270	CN97_03465	CN97_17270	CN97_03465	Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 9 family.	Manganese transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.597
CN97_17270	CN97_17265	CN97_17270	CN97_17265	Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 9 family.	Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.547
CN97_17270	CN97_17275	CN97_17270	CN97_17275	Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 9 family.	Manganese/iron transporter ATP-binding protein; With SitACD is involved in the transport of manganese and iron; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
CN97_17270	CN97_17280	CN97_17270	CN97_17280	Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 9 family.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
CN97_17270	CN97_17285	CN97_17270	CN97_17285	Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 9 family.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
CN97_17270	CN97_17290	CN97_17270	CN97_17290	Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 9 family.	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.435
CN97_17270	CN97_19640	CN97_17270	CN97_19640	Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 9 family.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.929
CN97_17275	CN97_03465	CN97_17275	CN97_03465	Manganese/iron transporter ATP-binding protein; With SitACD is involved in the transport of manganese and iron; Derived by automated computational analysis using gene prediction method: Protein Homology.	Manganese transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.444
CN97_17275	CN97_17265	CN97_17275	CN97_17265	Manganese/iron transporter ATP-binding protein; With SitACD is involved in the transport of manganese and iron; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.547
CN97_17275	CN97_17270	CN97_17275	CN97_17270	Manganese/iron transporter ATP-binding protein; With SitACD is involved in the transport of manganese and iron; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 9 family.	0.999
CN97_17275	CN97_17280	CN97_17275	CN97_17280	Manganese/iron transporter ATP-binding protein; With SitACD is involved in the transport of manganese and iron; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
CN97_17275	CN97_17285	CN97_17275	CN97_17285	Manganese/iron transporter ATP-binding protein; With SitACD is involved in the transport of manganese and iron; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998

page 1 of 4

Server load: low (22%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2024

Credits

Access

Info

About